Add custom nodes, Civitai loras (LFS), and vast.ai setup script
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Includes 30 custom nodes committed directly, 7 Civitai-exclusive
loras stored via Git LFS, and a setup script that installs all
dependencies and downloads HuggingFace-hosted models on vast.ai.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
This commit is contained in:
2026-02-09 00:55:26 +00:00
parent 2b70ab9ad0
commit f09734b0ee
2274 changed files with 748556 additions and 3 deletions

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{
"architectures": [
"BertModel"
],
"attention_probs_dropout_prob": 0.1,
"hidden_act": "gelu",
"hidden_dropout_prob": 0.1,
"hidden_size": 768,
"initializer_range": 0.02,
"intermediate_size": 3072,
"layer_norm_eps": 1e-12,
"max_position_embeddings": 512,
"model_type": "bert",
"num_attention_heads": 12,
"num_hidden_layers": 12,
"pad_token_id": 0,
"type_vocab_size": 2,
"vocab_size": 30522,
"encoder_width": 768,
"add_cross_attention": true
}

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image_root: '/export/share/datasets/vision/coco/images/'
ann_root: 'annotation'
coco_gt_root: 'annotation/coco_gt'
# set pretrained as a file path or an url
pretrained: 'https://storage.googleapis.com/sfr-vision-language-research/BLIP/models/model_base_caption_capfilt_large.pth'
# size of vit model; base or large
vit: 'base'
vit_grad_ckpt: False
vit_ckpt_layer: 0
batch_size: 32
init_lr: 1e-5
# vit: 'large'
# vit_grad_ckpt: True
# vit_ckpt_layer: 5
# batch_size: 16
# init_lr: 2e-6
image_size: 384
# generation configs
max_length: 20
min_length: 5
num_beams: 3
prompt: 'a picture of '
# optimizer
weight_decay: 0.05
min_lr: 0
max_epoch: 5

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{
"architectures": [
"BertModel"
],
"attention_probs_dropout_prob": 0.1,
"hidden_act": "gelu",
"hidden_dropout_prob": 0.1,
"hidden_size": 768,
"initializer_range": 0.02,
"intermediate_size": 3072,
"layer_norm_eps": 1e-12,
"max_position_embeddings": 512,
"model_type": "bert",
"num_attention_heads": 12,
"num_hidden_layers": 12,
"pad_token_id": 0,
"type_vocab_size": 2,
"vocab_size": 30524,
"encoder_width": 768,
"add_cross_attention": true
}

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image_root: '/export/share/datasets/vision/NLVR2/'
ann_root: 'annotation'
# set pretrained as a file path or an url
pretrained: 'https://storage.googleapis.com/sfr-vision-language-research/BLIP/models/model_base_nlvr.pth'
#size of vit model; base or large
vit: 'base'
batch_size_train: 16
batch_size_test: 64
vit_grad_ckpt: False
vit_ckpt_layer: 0
max_epoch: 15
image_size: 384
# optimizer
weight_decay: 0.05
init_lr: 3e-5
min_lr: 0

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image_root: '/export/share/datasets/vision/nocaps/'
ann_root: 'annotation'
# set pretrained as a file path or an url
pretrained: 'https://storage.googleapis.com/sfr-vision-language-research/BLIP/models/model_base_caption_capfilt_large.pth'
vit: 'base'
batch_size: 32
image_size: 384
max_length: 20
min_length: 5
num_beams: 3
prompt: 'a picture of '

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train_file: ['/export/share/junnan-li/VL_pretrain/annotation/coco_karpathy_train.json',
'/export/share/junnan-li/VL_pretrain/annotation/vg_caption.json',
]
laion_path: ''
# size of vit model; base or large
vit: 'base'
vit_grad_ckpt: False
vit_ckpt_layer: 0
image_size: 224
batch_size: 75
queue_size: 57600
alpha: 0.4
# optimizer
weight_decay: 0.05
init_lr: 3e-4
min_lr: 1e-6
warmup_lr: 1e-6
lr_decay_rate: 0.9
max_epoch: 20
warmup_steps: 3000

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image_root: '/export/share/datasets/vision/coco/images/'
ann_root: 'annotation'
dataset: 'coco'
# set pretrained as a file path or an url
pretrained: 'https://storage.googleapis.com/sfr-vision-language-research/BLIP/models/model_base_retrieval_coco.pth'
# size of vit model; base or large
vit: 'base'
batch_size_train: 32
batch_size_test: 64
vit_grad_ckpt: True
vit_ckpt_layer: 4
init_lr: 1e-5
# vit: 'large'
# batch_size_train: 16
# batch_size_test: 32
# vit_grad_ckpt: True
# vit_ckpt_layer: 12
# init_lr: 5e-6
image_size: 384
queue_size: 57600
alpha: 0.4
k_test: 256
negative_all_rank: True
# optimizer
weight_decay: 0.05
min_lr: 0
max_epoch: 6

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image_root: '/export/share/datasets/vision/flickr30k/'
ann_root: 'annotation'
dataset: 'flickr'
# set pretrained as a file path or an url
pretrained: 'https://storage.googleapis.com/sfr-vision-language-research/BLIP/models/model_base_retrieval_flickr.pth'
# size of vit model; base or large
vit: 'base'
batch_size_train: 32
batch_size_test: 64
vit_grad_ckpt: True
vit_ckpt_layer: 4
init_lr: 1e-5
# vit: 'large'
# batch_size_train: 16
# batch_size_test: 32
# vit_grad_ckpt: True
# vit_ckpt_layer: 10
# init_lr: 5e-6
image_size: 384
queue_size: 57600
alpha: 0.4
k_test: 128
negative_all_rank: False
# optimizer
weight_decay: 0.05
min_lr: 0
max_epoch: 6

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video_root: '/export/share/dongxuli/data/msrvtt_retrieval/videos'
ann_root: 'annotation'
# set pretrained as a file path or an url
pretrained: 'https://storage.googleapis.com/sfr-vision-language-research/BLIP/models/model_base_retrieval_coco.pth'
# size of vit model; base or large
vit: 'base'
batch_size: 64
k_test: 128
image_size: 384
num_frm_test: 8

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vqa_root: '/export/share/datasets/vision/VQA/Images/mscoco/' #followed by train2014/
vg_root: '/export/share/datasets/vision/visual-genome/' #followed by image/
train_files: ['vqa_train','vqa_val','vg_qa']
ann_root: 'annotation'
# set pretrained as a file path or an url
pretrained: 'https://storage.googleapis.com/sfr-vision-language-research/BLIP/models/model_base_vqa_capfilt_large.pth'
# size of vit model; base or large
vit: 'base'
batch_size_train: 16
batch_size_test: 32
vit_grad_ckpt: False
vit_ckpt_layer: 0
init_lr: 2e-5
image_size: 480
k_test: 128
inference: 'rank'
# optimizer
weight_decay: 0.05
min_lr: 0
max_epoch: 10

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'''
* Copyright (c) 2022, salesforce.com, inc.
* All rights reserved.
* SPDX-License-Identifier: BSD-3-Clause
* For full license text, see LICENSE.txt file in the repo root or https://opensource.org/licenses/BSD-3-Clause
* By Junnan Li
* Based on huggingface code base
* https://github.com/huggingface/transformers/blob/v4.15.0/src/transformers/models/bert
'''
import math
import os
import warnings
from dataclasses import dataclass
from typing import Optional, Tuple
import torch
from torch import Tensor, device, dtype, nn
import torch.utils.checkpoint
from torch import nn
from torch.nn import CrossEntropyLoss
import torch.nn.functional as F
from transformers.activations import ACT2FN
from transformers.file_utils import (
ModelOutput,
)
from transformers.modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPoolingAndCrossAttentions,
CausalLMOutputWithCrossAttentions,
MaskedLMOutput,
MultipleChoiceModelOutput,
NextSentencePredictorOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from transformers.modeling_utils import (
PreTrainedModel,
apply_chunking_to_forward,
find_pruneable_heads_and_indices,
prune_linear_layer,
)
from transformers.utils import logging
from transformers.models.bert.configuration_bert import BertConfig
logger = logging.get_logger(__name__)
class BertEmbeddings(nn.Module):
"""Construct the embeddings from word and position embeddings."""
def __init__(self, config):
super().__init__()
self.word_embeddings = nn.Embedding(config.vocab_size, config.hidden_size, padding_idx=config.pad_token_id)
self.position_embeddings = nn.Embedding(config.max_position_embeddings, config.hidden_size)
# self.LayerNorm is not snake-cased to stick with TensorFlow model variable name and be able to load
# any TensorFlow checkpoint file
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
# position_ids (1, len position emb) is contiguous in memory and exported when serialized
self.register_buffer("position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)))
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
self.config = config
def forward(
self, input_ids=None, position_ids=None, inputs_embeds=None, past_key_values_length=0
):
if input_ids is not None:
input_shape = input_ids.size()
else:
input_shape = inputs_embeds.size()[:-1]
seq_length = input_shape[1]
if position_ids is None:
position_ids = self.position_ids[:, past_key_values_length : seq_length + past_key_values_length]
if inputs_embeds is None:
inputs_embeds = self.word_embeddings(input_ids)
embeddings = inputs_embeds
if self.position_embedding_type == "absolute":
position_embeddings = self.position_embeddings(position_ids)
embeddings += position_embeddings
embeddings = self.LayerNorm(embeddings)
embeddings = self.dropout(embeddings)
return embeddings
class BertSelfAttention(nn.Module):
def __init__(self, config, is_cross_attention):
super().__init__()
self.config = config
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
"The hidden size (%d) is not a multiple of the number of attention "
"heads (%d)" % (config.hidden_size, config.num_attention_heads)
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = nn.Linear(config.hidden_size, self.all_head_size)
if is_cross_attention:
self.key = nn.Linear(config.encoder_width, self.all_head_size)
self.value = nn.Linear(config.encoder_width, self.all_head_size)
else:
self.key = nn.Linear(config.hidden_size, self.all_head_size)
self.value = nn.Linear(config.hidden_size, self.all_head_size)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
self.max_position_embeddings = config.max_position_embeddings
self.distance_embedding = nn.Embedding(2 * config.max_position_embeddings - 1, self.attention_head_size)
self.save_attention = False
def save_attn_gradients(self, attn_gradients):
self.attn_gradients = attn_gradients
def get_attn_gradients(self):
return self.attn_gradients
def save_attention_map(self, attention_map):
self.attention_map = attention_map
def get_attention_map(self):
return self.attention_map
def transpose_for_scores(self, x):
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(*new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
):
mixed_query_layer = self.query(hidden_states)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
is_cross_attention = encoder_hidden_states is not None
if is_cross_attention:
key_layer = self.transpose_for_scores(self.key(encoder_hidden_states))
value_layer = self.transpose_for_scores(self.value(encoder_hidden_states))
attention_mask = encoder_attention_mask
elif past_key_value is not None:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
key_layer = torch.cat([past_key_value[0], key_layer], dim=2)
value_layer = torch.cat([past_key_value[1], value_layer], dim=2)
else:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
past_key_value = (key_layer, value_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
seq_length = hidden_states.size()[1]
position_ids_l = torch.arange(seq_length, dtype=torch.long, device=hidden_states.device).view(-1, 1)
position_ids_r = torch.arange(seq_length, dtype=torch.long, device=hidden_states.device).view(1, -1)
distance = position_ids_l - position_ids_r
positional_embedding = self.distance_embedding(distance + self.max_position_embeddings - 1)
positional_embedding = positional_embedding.to(dtype=query_layer.dtype) # fp16 compatibility
if self.position_embedding_type == "relative_key":
relative_position_scores = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores
elif self.position_embedding_type == "relative_key_query":
relative_position_scores_query = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
relative_position_scores_key = torch.einsum("bhrd,lrd->bhlr", key_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores_query + relative_position_scores_key
attention_scores = attention_scores / math.sqrt(self.attention_head_size)
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in BertModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = nn.Softmax(dim=-1)(attention_scores)
if is_cross_attention and self.save_attention:
self.save_attention_map(attention_probs)
attention_probs.register_hook(self.save_attn_gradients)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs_dropped = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs_dropped = attention_probs_dropped * head_mask
context_layer = torch.matmul(attention_probs_dropped, value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(*new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
outputs = outputs + (past_key_value,)
return outputs
class BertSelfOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, input_tensor):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
class BertAttention(nn.Module):
def __init__(self, config, is_cross_attention=False):
super().__init__()
self.self = BertSelfAttention(config, is_cross_attention)
self.output = BertSelfOutput(config)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
):
self_outputs = self.self(
hidden_states,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
attention_output = self.output(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
class BertIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states):
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
class BertOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, input_tensor):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
class BertLayer(nn.Module):
def __init__(self, config, layer_num):
super().__init__()
self.config = config
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = BertAttention(config)
self.layer_num = layer_num
if self.config.add_cross_attention:
self.crossattention = BertAttention(config, is_cross_attention=self.config.add_cross_attention)
self.intermediate = BertIntermediate(config)
self.output = BertOutput(config)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
mode=None,
):
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
self_attention_outputs = self.attention(
hidden_states,
attention_mask,
head_mask,
output_attentions=output_attentions,
past_key_value=self_attn_past_key_value,
)
attention_output = self_attention_outputs[0]
outputs = self_attention_outputs[1:-1]
present_key_value = self_attention_outputs[-1]
if mode=='multimodal':
assert encoder_hidden_states is not None, "encoder_hidden_states must be given for cross-attention layers"
cross_attention_outputs = self.crossattention(
attention_output,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
output_attentions=output_attentions,
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:-1] # add cross attentions if we output attention weights
layer_output = apply_chunking_to_forward(
self.feed_forward_chunk, self.chunk_size_feed_forward, self.seq_len_dim, attention_output
)
outputs = (layer_output,) + outputs
outputs = outputs + (present_key_value,)
return outputs
def feed_forward_chunk(self, attention_output):
intermediate_output = self.intermediate(attention_output)
layer_output = self.output(intermediate_output, attention_output)
return layer_output
class BertEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.layer = nn.ModuleList([BertLayer(config,i) for i in range(config.num_hidden_layers)])
self.gradient_checkpointing = False
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_values=None,
use_cache=None,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
mode='multimodal',
):
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None
next_decoder_cache = () if use_cache else None
for i in range(self.config.num_hidden_layers):
layer_module = self.layer[i]
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
past_key_value = past_key_values[i] if past_key_values is not None else None
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warn(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
def create_custom_forward(module):
def custom_forward(*inputs):
return module(*inputs, past_key_value, output_attentions)
return custom_forward
layer_outputs = torch.utils.checkpoint.checkpoint(
create_custom_forward(layer_module),
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
mode=mode,
)
else:
layer_outputs = layer_module(
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
mode=mode,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache += (layer_outputs[-1],)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_decoder_cache,
all_hidden_states,
all_self_attentions,
all_cross_attentions,
]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
class BertPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states):
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
class BertPredictionHeadTransform(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
if isinstance(config.hidden_act, str):
self.transform_act_fn = ACT2FN[config.hidden_act]
else:
self.transform_act_fn = config.hidden_act
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(self, hidden_states):
hidden_states = self.dense(hidden_states)
hidden_states = self.transform_act_fn(hidden_states)
hidden_states = self.LayerNorm(hidden_states)
return hidden_states
class BertLMPredictionHead(nn.Module):
def __init__(self, config):
super().__init__()
self.transform = BertPredictionHeadTransform(config)
# The output weights are the same as the input embeddings, but there is
# an output-only bias for each token.
self.decoder = nn.Linear(config.hidden_size, config.vocab_size, bias=False)
self.bias = nn.Parameter(torch.zeros(config.vocab_size))
# Need a link between the two variables so that the bias is correctly resized with `resize_token_embeddings`
self.decoder.bias = self.bias
def forward(self, hidden_states):
hidden_states = self.transform(hidden_states)
hidden_states = self.decoder(hidden_states)
return hidden_states
class BertOnlyMLMHead(nn.Module):
def __init__(self, config):
super().__init__()
self.predictions = BertLMPredictionHead(config)
def forward(self, sequence_output):
prediction_scores = self.predictions(sequence_output)
return prediction_scores
class BertPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = BertConfig
base_model_prefix = "bert"
_keys_to_ignore_on_load_missing = [r"position_ids"]
def _init_weights(self, module):
""" Initialize the weights """
if isinstance(module, (nn.Linear, nn.Embedding)):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
if isinstance(module, nn.Linear) and module.bias is not None:
module.bias.data.zero_()
class BertModel(BertPreTrainedModel):
"""
The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
cross-attention is added between the self-attention layers, following the architecture described in `Attention is
all you need <https://arxiv.org/abs/1706.03762>`__ by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit,
Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin.
argument and :obj:`add_cross_attention` set to :obj:`True`; an :obj:`encoder_hidden_states` is then expected as an
input to the forward pass.
"""
def __init__(self, config, add_pooling_layer=True):
super().__init__(config)
self.config = config
self.embeddings = BertEmbeddings(config)
self.encoder = BertEncoder(config)
self.pooler = BertPooler(config) if add_pooling_layer else None
self.init_weights()
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
def get_extended_attention_mask(self, attention_mask: Tensor, input_shape: Tuple[int], device: device, is_decoder: bool) -> Tensor:
"""
Makes broadcastable attention and causal masks so that future and masked tokens are ignored.
Arguments:
attention_mask (:obj:`torch.Tensor`):
Mask with ones indicating tokens to attend to, zeros for tokens to ignore.
input_shape (:obj:`Tuple[int]`):
The shape of the input to the model.
device: (:obj:`torch.device`):
The device of the input to the model.
Returns:
:obj:`torch.Tensor` The extended attention mask, with a the same dtype as :obj:`attention_mask.dtype`.
"""
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
if attention_mask.dim() == 3:
extended_attention_mask = attention_mask[:, None, :, :]
elif attention_mask.dim() == 2:
# Provided a padding mask of dimensions [batch_size, seq_length]
# - if the model is a decoder, apply a causal mask in addition to the padding mask
# - if the model is an encoder, make the mask broadcastable to [batch_size, num_heads, seq_length, seq_length]
if is_decoder:
batch_size, seq_length = input_shape
seq_ids = torch.arange(seq_length, device=device)
causal_mask = seq_ids[None, None, :].repeat(batch_size, seq_length, 1) <= seq_ids[None, :, None]
# in case past_key_values are used we need to add a prefix ones mask to the causal mask
# causal and attention masks must have same type with pytorch version < 1.3
causal_mask = causal_mask.to(attention_mask.dtype)
if causal_mask.shape[1] < attention_mask.shape[1]:
prefix_seq_len = attention_mask.shape[1] - causal_mask.shape[1]
causal_mask = torch.cat(
[
torch.ones((batch_size, seq_length, prefix_seq_len), device=device, dtype=causal_mask.dtype),
causal_mask,
],
axis=-1,
)
extended_attention_mask = causal_mask[:, None, :, :] * attention_mask[:, None, None, :]
else:
extended_attention_mask = attention_mask[:, None, None, :]
else:
raise ValueError(
"Wrong shape for input_ids (shape {}) or attention_mask (shape {})".format(
input_shape, attention_mask.shape
)
)
# Since attention_mask is 1.0 for positions we want to attend and 0.0 for
# masked positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and -10000.0 for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
extended_attention_mask = extended_attention_mask.to(dtype=self.dtype) # fp16 compatibility
extended_attention_mask = (1.0 - extended_attention_mask) * -10000.0
return extended_attention_mask
def forward(
self,
input_ids=None,
attention_mask=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
encoder_embeds=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_values=None,
use_cache=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
is_decoder=False,
mode='multimodal',
):
r"""
encoder_hidden_states (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`, `optional`):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in ``[0, 1]``:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
past_key_values (:obj:`tuple(tuple(torch.FloatTensor))` of length :obj:`config.n_layers` with each tuple having 4 tensors of shape :obj:`(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If :obj:`past_key_values` are used, the user can optionally input only the last :obj:`decoder_input_ids`
(those that don't have their past key value states given to this model) of shape :obj:`(batch_size, 1)`
instead of all :obj:`decoder_input_ids` of shape :obj:`(batch_size, sequence_length)`.
use_cache (:obj:`bool`, `optional`):
If set to :obj:`True`, :obj:`past_key_values` key value states are returned and can be used to speed up
decoding (see :obj:`past_key_values`).
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if is_decoder:
use_cache = use_cache if use_cache is not None else self.config.use_cache
else:
use_cache = False
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = input_ids.size()
batch_size, seq_length = input_shape
device = input_ids.device
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
batch_size, seq_length = input_shape
device = inputs_embeds.device
elif encoder_embeds is not None:
input_shape = encoder_embeds.size()[:-1]
batch_size, seq_length = input_shape
device = encoder_embeds.device
else:
raise ValueError("You have to specify either input_ids or inputs_embeds or encoder_embeds")
# past_key_values_length
past_key_values_length = past_key_values[0][0].shape[2] if past_key_values is not None else 0
if attention_mask is None:
attention_mask = torch.ones(((batch_size, seq_length + past_key_values_length)), device=device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape,
device, is_decoder)
# If a 2D or 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if encoder_hidden_states is not None:
if type(encoder_hidden_states) == list:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states[0].size()
else:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if type(encoder_attention_mask) == list:
encoder_extended_attention_mask = [self.invert_attention_mask(mask) for mask in encoder_attention_mask]
elif encoder_attention_mask is None:
encoder_attention_mask = torch.ones(encoder_hidden_shape, device=device)
encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask)
else:
encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask)
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
if encoder_embeds is None:
embedding_output = self.embeddings(
input_ids=input_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
past_key_values_length=past_key_values_length,
)
else:
embedding_output = encoder_embeds
encoder_outputs = self.encoder(
embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
mode=mode,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output) if self.pooler is not None else None
if not return_dict:
return (sequence_output, pooled_output) + encoder_outputs[1:]
return BaseModelOutputWithPoolingAndCrossAttentions(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
past_key_values=encoder_outputs.past_key_values,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
class BertLMHeadModel(BertPreTrainedModel):
_keys_to_ignore_on_load_unexpected = [r"pooler"]
_keys_to_ignore_on_load_missing = [r"position_ids", r"predictions.decoder.bias"]
def __init__(self, config):
super().__init__(config)
self.bert = BertModel(config, add_pooling_layer=False)
self.cls = BertOnlyMLMHead(config)
self.init_weights()
def get_output_embeddings(self):
return self.cls.predictions.decoder
def set_output_embeddings(self, new_embeddings):
self.cls.predictions.decoder = new_embeddings
def forward(
self,
input_ids=None,
attention_mask=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
labels=None,
past_key_values=None,
use_cache=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
return_logits=False,
is_decoder=True,
reduction='mean',
mode='multimodal',
):
r"""
encoder_hidden_states (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`, `optional`):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in ``[0, 1]``:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Labels for computing the left-to-right language modeling loss (next word prediction). Indices should be in
``[-100, 0, ..., config.vocab_size]`` (see ``input_ids`` docstring) Tokens with indices set to ``-100`` are
ignored (masked), the loss is only computed for the tokens with labels n ``[0, ..., config.vocab_size]``
past_key_values (:obj:`tuple(tuple(torch.FloatTensor))` of length :obj:`config.n_layers` with each tuple having 4 tensors of shape :obj:`(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If :obj:`past_key_values` are used, the user can optionally input only the last :obj:`decoder_input_ids`
(those that don't have their past key value states given to this model) of shape :obj:`(batch_size, 1)`
instead of all :obj:`decoder_input_ids` of shape :obj:`(batch_size, sequence_length)`.
use_cache (:obj:`bool`, `optional`):
If set to :obj:`True`, :obj:`past_key_values` key value states are returned and can be used to speed up
decoding (see :obj:`past_key_values`).
Returns:
Example::
>>> from transformers import BertTokenizer, BertLMHeadModel, BertConfig
>>> import torch
>>> tokenizer = BertTokenizer.from_pretrained('bert-base-cased')
>>> config = BertConfig.from_pretrained("bert-base-cased")
>>> model = BertLMHeadModel.from_pretrained('bert-base-cased', config=config)
>>> inputs = tokenizer("Hello, my dog is cute", return_tensors="pt")
>>> outputs = model(**inputs)
>>> prediction_logits = outputs.logits
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if labels is not None:
use_cache = False
outputs = self.bert(
input_ids,
attention_mask=attention_mask,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
is_decoder=is_decoder,
mode=mode,
)
sequence_output = outputs[0]
prediction_scores = self.cls(sequence_output)
if return_logits:
return prediction_scores[:, :-1, :].contiguous()
lm_loss = None
if labels is not None:
# we are doing next-token prediction; shift prediction scores and input ids by one
shifted_prediction_scores = prediction_scores[:, :-1, :].contiguous()
labels = labels[:, 1:].contiguous()
loss_fct = CrossEntropyLoss(reduction=reduction, label_smoothing=0.1)
lm_loss = loss_fct(shifted_prediction_scores.view(-1, self.config.vocab_size), labels.view(-1))
if reduction=='none':
lm_loss = lm_loss.view(prediction_scores.size(0),-1).sum(1)
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((lm_loss,) + output) if lm_loss is not None else output
return CausalLMOutputWithCrossAttentions(
loss=lm_loss,
logits=prediction_scores,
past_key_values=outputs.past_key_values,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
cross_attentions=outputs.cross_attentions,
)
def prepare_inputs_for_generation(self, input_ids, past=None, attention_mask=None, **model_kwargs):
input_shape = input_ids.shape
# if model is used as a decoder in encoder-decoder model, the decoder attention mask is created on the fly
if attention_mask is None:
attention_mask = input_ids.new_ones(input_shape)
# cut decoder_input_ids if past is used
if past is not None:
input_ids = input_ids[:, -1:]
return {
"input_ids": input_ids,
"attention_mask": attention_mask,
"past_key_values": past,
"encoder_hidden_states": model_kwargs.get("encoder_hidden_states", None),
"encoder_attention_mask": model_kwargs.get("encoder_attention_mask", None),
"is_decoder": True,
}
def _reorder_cache(self, past, beam_idx):
reordered_past = ()
for layer_past in past:
reordered_past += (tuple(past_state.index_select(0, beam_idx) for past_state in layer_past),)
return reordered_past

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'''
* Copyright (c) 2022, salesforce.com, inc.
* All rights reserved.
* SPDX-License-Identifier: BSD-3-Clause
* For full license text, see LICENSE.txt file in the repo root or https://opensource.org/licenses/BSD-3-Clause
* By Junnan Li
'''
import warnings
warnings.filterwarnings("ignore")
from .blip_vit import VisionTransformer, interpolate_pos_embed
from .blip_med import BertConfig, BertModel, BertLMHeadModel
from transformers import BertTokenizer
import torch
from torch import nn
import torch.nn.functional as F
import os
from urllib.parse import urlparse
from timm.models.hub import download_cached_file
import numpy as np
from pathlib import Path
LOCAL_PATH = os.path.dirname(os.path.abspath(__file__))
# BLIP
class BLIP_Base(nn.Module):
def __init__(self,
med_config = Path(LOCAL_PATH, 'blip_configs/med_config.json'),
image_size = 224,
vit = 'base',
vit_grad_ckpt = False,
vit_ckpt_layer = 0,
):
"""
Args:
med_config (str): path for the mixture of encoder-decoder model's configuration file
image_size (int): input image size
vit (str): model size of vision transformer
"""
super().__init__()
self.visual_encoder, vision_width = create_vit(vit,image_size, vit_grad_ckpt, vit_ckpt_layer)
self.tokenizer = init_tokenizer()
med_config = BertConfig.from_json_file(med_config)
med_config.encoder_width = vision_width
self.text_encoder = BertModel(config=med_config, add_pooling_layer=False)
def forward(self, image, caption, mode):
assert mode in ['image', 'text', 'multimodal'], "mode parameter must be image, text, or multimodal"
text = self.tokenizer(caption, return_tensors="pt").to(image.device)
if mode=='image':
# return image features
image_embeds = self.visual_encoder(image)
return image_embeds
elif mode=='text':
# return text features
text_output = self.text_encoder(text.input_ids, attention_mask = text.attention_mask,
return_dict = True, mode = 'text')
return text_output.last_hidden_state
elif mode=='multimodal':
# return multimodel features
image_embeds = self.visual_encoder(image)
image_atts = torch.ones(image_embeds.size()[:-1],dtype=torch.long).to(image.device)
text.input_ids[:,0] = self.tokenizer.enc_token_id
output = self.text_encoder(text.input_ids,
attention_mask = text.attention_mask,
encoder_hidden_states = image_embeds,
encoder_attention_mask = image_atts,
return_dict = True,
)
return output.last_hidden_state
class BLIP_Decoder(nn.Module):
def __init__(self,
med_config = Path(LOCAL_PATH, 'blip_configs/med_config.json'),
image_size = 384,
vit = 'base',
vit_grad_ckpt = False,
vit_ckpt_layer = 0,
prompt = 'a picture of ',
):
"""
Args:
med_config (str): path for the mixture of encoder-decoder model's configuration file
image_size (int): input image size
vit (str): model size of vision transformer
"""
super().__init__()
self.visual_encoder, vision_width = create_vit(vit,image_size, vit_grad_ckpt, vit_ckpt_layer)
self.tokenizer = init_tokenizer()
med_config = BertConfig.from_json_file(med_config)
med_config.encoder_width = vision_width
self.text_decoder = BertLMHeadModel(config=med_config)
self.prompt = prompt
self.prompt_length = len(self.tokenizer(self.prompt).input_ids)-1
def forward(self, image, caption):
image_embeds = self.visual_encoder(image)
image_atts = torch.ones(image_embeds.size()[:-1],dtype=torch.long).to(image.device)
text = self.tokenizer(caption, padding='longest', truncation=True, max_length=40, return_tensors="pt").to(image.device)
text.input_ids[:,0] = self.tokenizer.bos_token_id
decoder_targets = text.input_ids.masked_fill(text.input_ids == self.tokenizer.pad_token_id, -100)
decoder_targets[:,:self.prompt_length] = -100
decoder_output = self.text_decoder(text.input_ids,
attention_mask = text.attention_mask,
encoder_hidden_states = image_embeds,
encoder_attention_mask = image_atts,
labels = decoder_targets,
return_dict = True,
)
loss_lm = decoder_output.loss
return loss_lm
def generate(self, image, sample=False, num_beams=3, max_length=30, min_length=10, top_p=0.9, repetition_penalty=1.0):
image_embeds = self.visual_encoder(image)
if not sample:
image_embeds = image_embeds.repeat_interleave(num_beams,dim=0)
image_atts = torch.ones(image_embeds.size()[:-1],dtype=torch.long).to(image.device)
model_kwargs = {"encoder_hidden_states": image_embeds, "encoder_attention_mask":image_atts}
prompt = [self.prompt] * image.size(0)
input_ids = self.tokenizer(prompt, return_tensors="pt").input_ids.to(image.device)
input_ids[:,0] = self.tokenizer.bos_token_id
input_ids = input_ids[:, :-1]
if sample:
#nucleus sampling
outputs = self.text_decoder.generate(input_ids=input_ids,
max_length=max_length,
min_length=min_length,
do_sample=True,
top_p=top_p,
num_return_sequences=1,
eos_token_id=self.tokenizer.sep_token_id,
pad_token_id=self.tokenizer.pad_token_id,
repetition_penalty=1.1,
**model_kwargs)
else:
#beam search
outputs = self.text_decoder.generate(input_ids=input_ids,
max_length=max_length,
min_length=min_length,
num_beams=num_beams,
eos_token_id=self.tokenizer.sep_token_id,
pad_token_id=self.tokenizer.pad_token_id,
repetition_penalty=repetition_penalty,
**model_kwargs)
captions = []
for output in outputs:
caption = self.tokenizer.decode(output, skip_special_tokens=True)
captions.append(caption[len(self.prompt):])
return captions
def blip_decoder(pretrained='',**kwargs):
model = BLIP_Decoder(**kwargs)
if pretrained:
model,msg = load_checkpoint(model,pretrained)
assert(len(msg.missing_keys)==0)
return model
def blip_feature_extractor(pretrained='',**kwargs):
model = BLIP_Base(**kwargs)
if pretrained:
model,msg = load_checkpoint(model,pretrained)
assert(len(msg.missing_keys)==0)
return model
def init_tokenizer():
tokenizer = BertTokenizer.from_pretrained('bert-base-uncased')
tokenizer.add_special_tokens({'bos_token':'[DEC]'})
tokenizer.add_special_tokens({'additional_special_tokens':['[ENC]']})
tokenizer.enc_token_id = tokenizer.additional_special_tokens_ids[0]
return tokenizer
def create_vit(vit, image_size, use_grad_checkpointing=False, ckpt_layer=0, drop_path_rate=0):
assert vit in ['base', 'large'], "vit parameter must be base or large"
if vit=='base':
vision_width = 768
visual_encoder = VisionTransformer(img_size=image_size, patch_size=16, embed_dim=vision_width, depth=12,
num_heads=12, use_grad_checkpointing=use_grad_checkpointing, ckpt_layer=ckpt_layer,
drop_path_rate=0 or drop_path_rate
)
elif vit=='large':
vision_width = 1024
visual_encoder = VisionTransformer(img_size=image_size, patch_size=16, embed_dim=vision_width, depth=24,
num_heads=16, use_grad_checkpointing=use_grad_checkpointing, ckpt_layer=ckpt_layer,
drop_path_rate=0.1 or drop_path_rate
)
return visual_encoder, vision_width
def is_url(url_or_filename):
parsed = urlparse(url_or_filename)
return parsed.scheme in ("http", "https")
def load_checkpoint(model,url_or_filename):
if is_url(url_or_filename):
cached_file = download_cached_file(url_or_filename, check_hash=False, progress=True)
checkpoint = torch.load(cached_file, map_location='cpu')
elif os.path.isfile(url_or_filename):
checkpoint = torch.load(url_or_filename, map_location='cpu')
else:
raise RuntimeError('checkpoint url or path is invalid')
state_dict = checkpoint['model']
state_dict['visual_encoder.pos_embed'] = interpolate_pos_embed(state_dict['visual_encoder.pos_embed'],model.visual_encoder)
if 'visual_encoder_m.pos_embed' in model.state_dict().keys():
state_dict['visual_encoder_m.pos_embed'] = interpolate_pos_embed(state_dict['visual_encoder_m.pos_embed'],
model.visual_encoder_m)
for key in model.state_dict().keys():
if key in state_dict.keys():
if state_dict[key].shape!=model.state_dict()[key].shape:
del state_dict[key]
msg = model.load_state_dict(state_dict,strict=False)
print('load checkpoint from %s'%url_or_filename)
return model,msg
# BLIP VQA
class BLIP_VQA(nn.Module):
def __init__(self,
med_config = Path(LOCAL_PATH, 'blip_configs/med_config.json'),
image_size = 480,
vit = 'base',
vit_grad_ckpt = False,
vit_ckpt_layer = 0,
):
"""
Args:
med_config (str): path for the mixture of encoder-decoder model's configuration file
image_size (int): input image size
vit (str): model size of vision transformer
"""
super().__init__()
self.visual_encoder, vision_width = create_vit(vit, image_size, vit_grad_ckpt, vit_ckpt_layer, drop_path_rate=0.1)
self.tokenizer = init_tokenizer()
encoder_config = BertConfig.from_json_file(med_config)
encoder_config.encoder_width = vision_width
self.text_encoder = BertModel(config=encoder_config, add_pooling_layer=False)
decoder_config = BertConfig.from_json_file(med_config)
self.text_decoder = BertLMHeadModel(config=decoder_config)
def forward(self, image, question, answer=None, n=None, weights=None, train=True, inference='rank', k_test=128):
image_embeds = self.visual_encoder(image)
image_atts = torch.ones(image_embeds.size()[:-1],dtype=torch.long).to(image.device)
question = self.tokenizer(question, padding='longest', truncation=True, max_length=35,
return_tensors="pt").to(image.device)
question.input_ids[:,0] = self.tokenizer.enc_token_id
if train:
'''
n: number of answers for each question
weights: weight for each answer
'''
answer = self.tokenizer(answer, padding='longest', return_tensors="pt").to(image.device)
answer.input_ids[:,0] = self.tokenizer.bos_token_id
answer_targets = answer.input_ids.masked_fill(answer.input_ids == self.tokenizer.pad_token_id, -100)
question_output = self.text_encoder(question.input_ids,
attention_mask = question.attention_mask,
encoder_hidden_states = image_embeds,
encoder_attention_mask = image_atts,
return_dict = True)
question_states = []
question_atts = []
for b, n in enumerate(n):
question_states += [question_output.last_hidden_state[b]]*n
question_atts += [question.attention_mask[b]]*n
question_states = torch.stack(question_states,0)
question_atts = torch.stack(question_atts,0)
answer_output = self.text_decoder(answer.input_ids,
attention_mask = answer.attention_mask,
encoder_hidden_states = question_states,
encoder_attention_mask = question_atts,
labels = answer_targets,
return_dict = True,
reduction = 'none',
)
loss = weights * answer_output.loss
loss = loss.sum()/image.size(0)
return loss
else:
question_output = self.text_encoder(question.input_ids,
attention_mask = question.attention_mask,
encoder_hidden_states = image_embeds,
encoder_attention_mask = image_atts,
return_dict = True)
if inference=='generate':
num_beams = 3
question_states = question_output.last_hidden_state.repeat_interleave(num_beams,dim=0)
question_atts = torch.ones(question_states.size()[:-1],dtype=torch.long).to(question_states.device)
model_kwargs = {"encoder_hidden_states": question_states, "encoder_attention_mask":question_atts}
bos_ids = torch.full((image.size(0),1),fill_value=self.tokenizer.bos_token_id,device=image.device)
outputs = self.text_decoder.generate(input_ids=bos_ids,
max_length=10,
min_length=1,
num_beams=num_beams,
eos_token_id=self.tokenizer.sep_token_id,
pad_token_id=self.tokenizer.pad_token_id,
**model_kwargs)
answers = []
for output in outputs:
answer = self.tokenizer.decode(output, skip_special_tokens=True)
answers.append(answer)
return answers
elif inference=='rank':
max_ids = self.rank_answer(question_output.last_hidden_state, question.attention_mask,
answer.input_ids, answer.attention_mask, k_test)
return max_ids
def rank_answer(self, question_states, question_atts, answer_ids, answer_atts, k):
num_ques = question_states.size(0)
start_ids = answer_ids[0,0].repeat(num_ques,1) # bos token
start_output = self.text_decoder(start_ids,
encoder_hidden_states = question_states,
encoder_attention_mask = question_atts,
return_dict = True,
reduction = 'none')
logits = start_output.logits[:,0,:] # first token's logit
# topk_probs: top-k probability
# topk_ids: [num_question, k]
answer_first_token = answer_ids[:,1]
prob_first_token = F.softmax(logits,dim=1).index_select(dim=1, index=answer_first_token)
topk_probs, topk_ids = prob_first_token.topk(k,dim=1)
# answer input: [num_question*k, answer_len]
input_ids = []
input_atts = []
for b, topk_id in enumerate(topk_ids):
input_ids.append(answer_ids.index_select(dim=0, index=topk_id))
input_atts.append(answer_atts.index_select(dim=0, index=topk_id))
input_ids = torch.cat(input_ids,dim=0)
input_atts = torch.cat(input_atts,dim=0)
targets_ids = input_ids.masked_fill(input_ids == self.tokenizer.pad_token_id, -100)
# repeat encoder's output for top-k answers
question_states = tile(question_states, 0, k)
question_atts = tile(question_atts, 0, k)
output = self.text_decoder(input_ids,
attention_mask = input_atts,
encoder_hidden_states = question_states,
encoder_attention_mask = question_atts,
labels = targets_ids,
return_dict = True,
reduction = 'none')
log_probs_sum = -output.loss
log_probs_sum = log_probs_sum.view(num_ques,k)
max_topk_ids = log_probs_sum.argmax(dim=1)
max_ids = topk_ids[max_topk_ids>=0,max_topk_ids]
return max_ids
def blip_vqa(pretrained='',**kwargs):
model = BLIP_VQA(**kwargs)
if pretrained:
model,msg = load_checkpoint(model,pretrained)
# assert(len(msg.missing_keys)==0)
return model
def tile(x, dim, n_tile):
init_dim = x.size(dim)
repeat_idx = [1] * x.dim()
repeat_idx[dim] = n_tile
x = x.repeat(*(repeat_idx))
order_index = torch.LongTensor(np.concatenate([init_dim * np.arange(n_tile) + i for i in range(init_dim)]))
return torch.index_select(x, dim, order_index.to(x.device))

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Copyright (c) 2022, Salesforce.com, Inc.
All rights reserved.
Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
* Neither the name of Salesforce.com nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

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'''
* Copyright (c) 2022, salesforce.com, inc.
* All rights reserved.
* SPDX-License-Identifier: BSD-3-Clause
* For full license text, see LICENSE.txt file in the repo root or https://opensource.org/licenses/BSD-3-Clause
* By Junnan Li
* Based on timm code base
* https://github.com/rwightman/pytorch-image-models/tree/master/timm
'''
import torch
import torch.nn as nn
import torch.nn.functional as F
from functools import partial
from timm.models.vision_transformer import _cfg, PatchEmbed
from timm.models.registry import register_model
from timm.models.layers import trunc_normal_, DropPath
from timm.models.helpers import named_apply, adapt_input_conv
from fairscale.nn.checkpoint.checkpoint_activations import checkpoint_wrapper
class Mlp(nn.Module):
""" MLP as used in Vision Transformer, MLP-Mixer and related networks
"""
def __init__(self, in_features, hidden_features=None, out_features=None, act_layer=nn.GELU, drop=0.):
super().__init__()
out_features = out_features or in_features
hidden_features = hidden_features or in_features
self.fc1 = nn.Linear(in_features, hidden_features)
self.act = act_layer()
self.fc2 = nn.Linear(hidden_features, out_features)
self.drop = nn.Dropout(drop)
def forward(self, x):
x = self.fc1(x)
x = self.act(x)
x = self.drop(x)
x = self.fc2(x)
x = self.drop(x)
return x
class Attention(nn.Module):
def __init__(self, dim, num_heads=8, qkv_bias=False, qk_scale=None, attn_drop=0., proj_drop=0.):
super().__init__()
self.num_heads = num_heads
head_dim = dim // num_heads
# NOTE scale factor was wrong in my original version, can set manually to be compat with prev weights
self.scale = qk_scale or head_dim ** -0.5
self.qkv = nn.Linear(dim, dim * 3, bias=qkv_bias)
self.attn_drop = nn.Dropout(attn_drop)
self.proj = nn.Linear(dim, dim)
self.proj_drop = nn.Dropout(proj_drop)
self.attn_gradients = None
self.attention_map = None
def save_attn_gradients(self, attn_gradients):
self.attn_gradients = attn_gradients
def get_attn_gradients(self):
return self.attn_gradients
def save_attention_map(self, attention_map):
self.attention_map = attention_map
def get_attention_map(self):
return self.attention_map
def forward(self, x, register_hook=False):
B, N, C = x.shape
qkv = self.qkv(x).reshape(B, N, 3, self.num_heads, C // self.num_heads).permute(2, 0, 3, 1, 4)
q, k, v = qkv[0], qkv[1], qkv[2] # make torchscript happy (cannot use tensor as tuple)
attn = (q @ k.transpose(-2, -1)) * self.scale
attn = attn.softmax(dim=-1)
attn = self.attn_drop(attn)
if register_hook:
self.save_attention_map(attn)
attn.register_hook(self.save_attn_gradients)
x = (attn @ v).transpose(1, 2).reshape(B, N, C)
x = self.proj(x)
x = self.proj_drop(x)
return x
class Block(nn.Module):
def __init__(self, dim, num_heads, mlp_ratio=4., qkv_bias=False, qk_scale=None, drop=0., attn_drop=0.,
drop_path=0., act_layer=nn.GELU, norm_layer=nn.LayerNorm, use_grad_checkpointing=False):
super().__init__()
self.norm1 = norm_layer(dim)
self.attn = Attention(
dim, num_heads=num_heads, qkv_bias=qkv_bias, qk_scale=qk_scale, attn_drop=attn_drop, proj_drop=drop)
# NOTE: drop path for stochastic depth, we shall see if this is better than dropout here
self.drop_path = DropPath(drop_path) if drop_path > 0. else nn.Identity()
self.norm2 = norm_layer(dim)
mlp_hidden_dim = int(dim * mlp_ratio)
self.mlp = Mlp(in_features=dim, hidden_features=mlp_hidden_dim, act_layer=act_layer, drop=drop)
if use_grad_checkpointing:
self.attn = checkpoint_wrapper(self.attn)
self.mlp = checkpoint_wrapper(self.mlp)
def forward(self, x, register_hook=False):
x = x + self.drop_path(self.attn(self.norm1(x), register_hook=register_hook))
x = x + self.drop_path(self.mlp(self.norm2(x)))
return x
class VisionTransformer(nn.Module):
""" Vision Transformer
A PyTorch impl of : `An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale` -
https://arxiv.org/abs/2010.11929
"""
def __init__(self, img_size=224, patch_size=16, in_chans=3, num_classes=1000, embed_dim=768, depth=12,
num_heads=12, mlp_ratio=4., qkv_bias=True, qk_scale=None, representation_size=None,
drop_rate=0., attn_drop_rate=0., drop_path_rate=0., norm_layer=None,
use_grad_checkpointing=False, ckpt_layer=0):
"""
Args:
img_size (int, tuple): input image size
patch_size (int, tuple): patch size
in_chans (int): number of input channels
num_classes (int): number of classes for classification head
embed_dim (int): embedding dimension
depth (int): depth of transformer
num_heads (int): number of attention heads
mlp_ratio (int): ratio of mlp hidden dim to embedding dim
qkv_bias (bool): enable bias for qkv if True
qk_scale (float): override default qk scale of head_dim ** -0.5 if set
representation_size (Optional[int]): enable and set representation layer (pre-logits) to this value if set
drop_rate (float): dropout rate
attn_drop_rate (float): attention dropout rate
drop_path_rate (float): stochastic depth rate
norm_layer: (nn.Module): normalization layer
"""
super().__init__()
self.num_features = self.embed_dim = embed_dim # num_features for consistency with other models
norm_layer = norm_layer or partial(nn.LayerNorm, eps=1e-6)
self.patch_embed = PatchEmbed(
img_size=img_size, patch_size=patch_size, in_chans=in_chans, embed_dim=embed_dim)
num_patches = self.patch_embed.num_patches
self.cls_token = nn.Parameter(torch.zeros(1, 1, embed_dim))
self.pos_embed = nn.Parameter(torch.zeros(1, num_patches + 1, embed_dim))
self.pos_drop = nn.Dropout(p=drop_rate)
dpr = [x.item() for x in torch.linspace(0, drop_path_rate, depth)] # stochastic depth decay rule
self.blocks = nn.ModuleList([
Block(
dim=embed_dim, num_heads=num_heads, mlp_ratio=mlp_ratio, qkv_bias=qkv_bias, qk_scale=qk_scale,
drop=drop_rate, attn_drop=attn_drop_rate, drop_path=dpr[i], norm_layer=norm_layer,
use_grad_checkpointing=(use_grad_checkpointing and i>=depth-ckpt_layer)
)
for i in range(depth)])
self.norm = norm_layer(embed_dim)
trunc_normal_(self.pos_embed, std=.02)
trunc_normal_(self.cls_token, std=.02)
self.apply(self._init_weights)
def _init_weights(self, m):
if isinstance(m, nn.Linear):
trunc_normal_(m.weight, std=.02)
if isinstance(m, nn.Linear) and m.bias is not None:
nn.init.constant_(m.bias, 0)
elif isinstance(m, nn.LayerNorm):
nn.init.constant_(m.bias, 0)
nn.init.constant_(m.weight, 1.0)
@torch.jit.ignore
def no_weight_decay(self):
return {'pos_embed', 'cls_token'}
def forward(self, x, register_blk=-1):
B = x.shape[0]
x = self.patch_embed(x)
cls_tokens = self.cls_token.expand(B, -1, -1) # stole cls_tokens impl from Phil Wang, thanks
x = torch.cat((cls_tokens, x), dim=1)
x = x + self.pos_embed[:,:x.size(1),:]
x = self.pos_drop(x)
for i,blk in enumerate(self.blocks):
x = blk(x, register_blk==i)
x = self.norm(x)
return x
@torch.jit.ignore()
def load_pretrained(self, checkpoint_path, prefix=''):
_load_weights(self, checkpoint_path, prefix)
@torch.no_grad()
def _load_weights(model: VisionTransformer, checkpoint_path: str, prefix: str = ''):
""" Load weights from .npz checkpoints for official Google Brain Flax implementation
"""
import numpy as np
def _n2p(w, t=True):
if w.ndim == 4 and w.shape[0] == w.shape[1] == w.shape[2] == 1:
w = w.flatten()
if t:
if w.ndim == 4:
w = w.transpose([3, 2, 0, 1])
elif w.ndim == 3:
w = w.transpose([2, 0, 1])
elif w.ndim == 2:
w = w.transpose([1, 0])
return torch.from_numpy(w)
w = np.load(checkpoint_path)
if not prefix and 'opt/target/embedding/kernel' in w:
prefix = 'opt/target/'
if hasattr(model.patch_embed, 'backbone'):
# hybrid
backbone = model.patch_embed.backbone
stem_only = not hasattr(backbone, 'stem')
stem = backbone if stem_only else backbone.stem
stem.conv.weight.copy_(adapt_input_conv(stem.conv.weight.shape[1], _n2p(w[f'{prefix}conv_root/kernel'])))
stem.norm.weight.copy_(_n2p(w[f'{prefix}gn_root/scale']))
stem.norm.bias.copy_(_n2p(w[f'{prefix}gn_root/bias']))
if not stem_only:
for i, stage in enumerate(backbone.stages):
for j, block in enumerate(stage.blocks):
bp = f'{prefix}block{i + 1}/unit{j + 1}/'
for r in range(3):
getattr(block, f'conv{r + 1}').weight.copy_(_n2p(w[f'{bp}conv{r + 1}/kernel']))
getattr(block, f'norm{r + 1}').weight.copy_(_n2p(w[f'{bp}gn{r + 1}/scale']))
getattr(block, f'norm{r + 1}').bias.copy_(_n2p(w[f'{bp}gn{r + 1}/bias']))
if block.downsample is not None:
block.downsample.conv.weight.copy_(_n2p(w[f'{bp}conv_proj/kernel']))
block.downsample.norm.weight.copy_(_n2p(w[f'{bp}gn_proj/scale']))
block.downsample.norm.bias.copy_(_n2p(w[f'{bp}gn_proj/bias']))
embed_conv_w = _n2p(w[f'{prefix}embedding/kernel'])
else:
embed_conv_w = adapt_input_conv(
model.patch_embed.proj.weight.shape[1], _n2p(w[f'{prefix}embedding/kernel']))
model.patch_embed.proj.weight.copy_(embed_conv_w)
model.patch_embed.proj.bias.copy_(_n2p(w[f'{prefix}embedding/bias']))
model.cls_token.copy_(_n2p(w[f'{prefix}cls'], t=False))
pos_embed_w = _n2p(w[f'{prefix}Transformer/posembed_input/pos_embedding'], t=False)
if pos_embed_w.shape != model.pos_embed.shape:
pos_embed_w = resize_pos_embed( # resize pos embedding when different size from pretrained weights
pos_embed_w, model.pos_embed, getattr(model, 'num_tokens', 1), model.patch_embed.grid_size)
model.pos_embed.copy_(pos_embed_w)
model.norm.weight.copy_(_n2p(w[f'{prefix}Transformer/encoder_norm/scale']))
model.norm.bias.copy_(_n2p(w[f'{prefix}Transformer/encoder_norm/bias']))
# if isinstance(model.head, nn.Linear) and model.head.bias.shape[0] == w[f'{prefix}head/bias'].shape[-1]:
# model.head.weight.copy_(_n2p(w[f'{prefix}head/kernel']))
# model.head.bias.copy_(_n2p(w[f'{prefix}head/bias']))
# if isinstance(getattr(model.pre_logits, 'fc', None), nn.Linear) and f'{prefix}pre_logits/bias' in w:
# model.pre_logits.fc.weight.copy_(_n2p(w[f'{prefix}pre_logits/kernel']))
# model.pre_logits.fc.bias.copy_(_n2p(w[f'{prefix}pre_logits/bias']))
for i, block in enumerate(model.blocks.children()):
block_prefix = f'{prefix}Transformer/encoderblock_{i}/'
mha_prefix = block_prefix + 'MultiHeadDotProductAttention_1/'
block.norm1.weight.copy_(_n2p(w[f'{block_prefix}LayerNorm_0/scale']))
block.norm1.bias.copy_(_n2p(w[f'{block_prefix}LayerNorm_0/bias']))
block.attn.qkv.weight.copy_(torch.cat([
_n2p(w[f'{mha_prefix}{n}/kernel'], t=False).flatten(1).T for n in ('query', 'key', 'value')]))
block.attn.qkv.bias.copy_(torch.cat([
_n2p(w[f'{mha_prefix}{n}/bias'], t=False).reshape(-1) for n in ('query', 'key', 'value')]))
block.attn.proj.weight.copy_(_n2p(w[f'{mha_prefix}out/kernel']).flatten(1))
block.attn.proj.bias.copy_(_n2p(w[f'{mha_prefix}out/bias']))
for r in range(2):
getattr(block.mlp, f'fc{r + 1}').weight.copy_(_n2p(w[f'{block_prefix}MlpBlock_3/Dense_{r}/kernel']))
getattr(block.mlp, f'fc{r + 1}').bias.copy_(_n2p(w[f'{block_prefix}MlpBlock_3/Dense_{r}/bias']))
block.norm2.weight.copy_(_n2p(w[f'{block_prefix}LayerNorm_2/scale']))
block.norm2.bias.copy_(_n2p(w[f'{block_prefix}LayerNorm_2/bias']))
def interpolate_pos_embed(pos_embed_checkpoint, visual_encoder):
# interpolate position embedding
embedding_size = pos_embed_checkpoint.shape[-1]
num_patches = visual_encoder.patch_embed.num_patches
num_extra_tokens = visual_encoder.pos_embed.shape[-2] - num_patches
# height (== width) for the checkpoint position embedding
orig_size = int((pos_embed_checkpoint.shape[-2] - num_extra_tokens) ** 0.5)
# height (== width) for the new position embedding
new_size = int(num_patches ** 0.5)
if orig_size!=new_size:
# class_token and dist_token are kept unchanged
extra_tokens = pos_embed_checkpoint[:, :num_extra_tokens]
# only the position tokens are interpolated
pos_tokens = pos_embed_checkpoint[:, num_extra_tokens:]
pos_tokens = pos_tokens.reshape(-1, orig_size, orig_size, embedding_size).permute(0, 3, 1, 2)
pos_tokens = torch.nn.functional.interpolate(
pos_tokens, size=(new_size, new_size), mode='bicubic', align_corners=False)
pos_tokens = pos_tokens.permute(0, 2, 3, 1).flatten(1, 2)
new_pos_embed = torch.cat((extra_tokens, pos_tokens), dim=1)
print('reshape position embedding from %d to %d'%(orig_size ** 2,new_size ** 2))
return new_pos_embed
else:
return pos_embed_checkpoint